Which individuals are genotyped

Returns the identifiers that appear in the genotype matrix. In a single-step analysis the pedigree usually names more individuals than this, and the difference is what Hmatrix() reconciles.

Usage

genotyped(x, ...)

# S4 method for class 'BreedingExperiment'
genotyped(x, ...)

Arguments

x

A BreedingExperiment object.

...

Unused.

Value

A character vector of individual identifiers.

Examples

set.seed(1)
be <- simulateBreeding(n_ind = 8, n_marker = 20)
genotyped(be)
#> [1] "ind001" "ind002" "ind003" "ind004" "ind005" "ind006" "ind007" "ind008"